SNP Profiles of EET 19   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
20._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
21._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
22._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
23._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
24._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
25._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
26._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
27._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
28._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
29._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
30._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
31._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
32._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
33._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
34._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
35._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
36._RUQ_1630
_AGCGCT___GT____CCAG
37._EET_19_[ECU]
CCAGCGCTCTACCTGTCTCTAAAGCCAG
38._RUQ_1630
CCAGCGCTCTACCTGTCTCTAAAGCCAG
39._EET_19_[ECU]
CCAGCGCTCTACCTGTCTCTAAAGCCAG
40._RUQ_1630
__CG____GT_CT_AG_AG
41._RUQ_1630
__CG_________CC_
42._MITC-000062
GGAGCGAAAGACAGCC__AAAGGGAA
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGGAGCCCGGGCTACGG
1._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
2._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
3._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
4._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
5._GC-05-184-4-37
TTATGGCTCTGGGGAGCCCGGGCTACGG
6._GC-05-184-4-37
TTATGGCTCTGGGGAGCCCGGGCTACGG
7._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
8._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
9._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
10._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
11._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
12._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
13._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
14._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
15._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
16._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
17._GC-08-085-2-08
TTATGGCTCTGGGGAGCCCGGGCTACGG
18._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
19._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
20._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
21._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
22._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
23._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
24._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
25._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
26._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
27._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
28._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
29._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCTACGG
30._GC-05-184-4-37
TTATGGCTCTGGGGAGCCCGGGCT_GG
31._GC-05-184-4-37
TTATGGCTCTGGGGAGCCCGGGCT_GG
32._GC-05-184-4-37
TTATGGCTCTGGGGAGCCCGGGCT_GG
33._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCT_GG
34._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCT_GG
35._EET_19_[ECU]
TTATGGCTCTGGGGAGCCCGGGCT_GG
36._RUQ_1630
____TTGGGG_CCCGGGCTACGG
37._EET_19_[ECU]
TTATGGCTCTGGGGGGCCCGGGCTACGG
38._RUQ_1630
TTATGGCTCTGGGGGGCCCGGGCTACGG
39._EET_19_[ECU]
TTATGGCTCTGGGGGGCCCGGGCTACGG
40._RUQ_1630
_____GGGGGGCCCG__AC_
41._RUQ_1630
TT___CTCC__CCCG____
42._MITC-000062
AGATGGAGAGCGCC_CCCGAC_AC_
 2930313233343536373839   
_Input profile
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
1._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
2._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
3._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
4._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
5._GC-05-184-4-37
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
6._GC-05-184-4-37
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
7._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
8._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
9._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
10._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
11._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
12._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
13._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
14._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
15._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
16._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
17._GC-08-085-2-08
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
18._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
19._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
20._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
21._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
22._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
23._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
24._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
25._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
26._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
27._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
28._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
29._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
30._GC-05-184-4-37
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
31._GC-05-184-4-37
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
32._GC-05-184-4-37
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
33._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
34._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
35._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
36._RUQ_1630
_ATCCAGCCCCCTGTCC__X_XX_XX_X
37._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
38._RUQ_1630
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
39._EET_19_[ECU]
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
40._RUQ_1630
___AG____CC__X_XX_XX_X
41._RUQ_1630
_AT_AGGGCCCT_CC__X_XX_XX_X
42._MITC-000062
AGATAGAACGCCAACCCCATCGX_XX_XX_X

Input profile: EET_19_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

1._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

17._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

19._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

20._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

21._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

22._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

23._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

24._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

25._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

26._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

27._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

28._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

29._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

30._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

32._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._EET_19_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

34._EET_19_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

35._EET_19_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

36._EET_19_[ECU] RUQ_1630

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_19_[ECU]

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

38._EET_19_[ECU] RUQ_1630

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._EET_19_[ECU]

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

41._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

51.5 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25